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HMM.cpp

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00027 
00028 #include <CONSTANZE/HMM.hpp>
00029 
00030 using namespace constanze;
00031 
00032 HMM::HMM(int numberOfStates):
00033     numberOfStates(numberOfStates)
00034 {
00035     // data type for transitionsMatrix and observationMatrix are vector of vector
00036     transitionsMatrix = new std::vector<std::vector<baumWelchDataType>*>();
00037     observationMatrix = new std::vector<std::vector<baumWelchDataType>*>();
00038     startStateProbability = new std::vector<baumWelchDataType>();
00039 
00040     for(int i = 0; i < numberOfStates; i++){
00041         transitionsMatrix->push_back(new std::vector<baumWelchDataType>());
00042     }
00043 
00044     for(int j = 0; j < numberOfStates; j++){
00045         observationMatrix->push_back(new std::vector<baumWelchDataType>());
00046     }
00047 
00048     // initialize transitionsMatrix, observationMatrix and startStateProbability
00049     for(int k = 0; k < numberOfStates; k++){
00050         for(int l = 0; l < numberOfStates; l++){
00051             transitionsMatrix->at(k)->push_back(1.0/numberOfStates);
00052             if(k == l)
00053                 observationMatrix->at(k)->push_back(1.0);
00054             else
00055                 observationMatrix->at(k)->push_back(0.0);
00056         }
00057         startStateProbability->push_back(1.0/numberOfStates);
00058     }
00059 
00060 }
00061 
00062 HMM::HMM(int numberOfStates,
00063          std::vector<std::vector<baumWelchDataType>*> *transitionsMatrix,
00064          std::vector<std::vector<baumWelchDataType>*> *observationMatrix,
00065          std::vector<baumWelchDataType> *startStateProbability):
00066 
00067          numberOfStates(numberOfStates),
00068          transitionsMatrix(transitionsMatrix),
00069          observationMatrix(observationMatrix),
00070          startStateProbability(startStateProbability)
00071 {
00072 }
00073 
00074 HMM::~HMM()
00075 {
00076     //set memory for interior vector free
00077     for(int i = 0; i < numberOfStates; i++){
00078         delete transitionsMatrix->at(i);
00079     }
00080 
00081     for(int j = 0; j < numberOfStates; j++){
00082         delete observationMatrix->at(j);
00083     }
00084 
00085     //set memory for exterior vector free
00086     delete transitionsMatrix;
00087     delete observationMatrix;
00088     delete startStateProbability;
00089 }
00090 
00091 int
00092 HMM::getNumberOfStates()
00093 {
00094     return numberOfStates;
00095 }
00096 
00097 baumWelchDataType
00098 HMM::getStartStateProbability(int index)
00099 {
00100     return startStateProbability->at(index);
00101 }
00102 
00103 baumWelchDataType
00104 HMM::getElementInTransitionsMatrix(int row, int column)
00105 {
00106     return transitionsMatrix->at(row)->at(column);
00107 }
00108 
00109 baumWelchDataType
00110 HMM::getElementInObservationMatrix(int row, int column)
00111 {
00112     return observationMatrix->at(row)->at(column);
00113 }
00114 
00115 std::vector<std::vector<baumWelchDataType>*>*
00116 HMM::getTransitionsMatrix()
00117 {
00118     return transitionsMatrix;
00119 }

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